PGT_2026v17n1

Plant Gene and Trait 2026, Vol.17, No.1, 1-11 http://genbreedpublisher.com/index.php/pgt 4 including 68 from Shanting District, 9 from Yicheng District, 4 from Shizhong District, and 19 from Tengzhou City. Using the method for estimating the optimal K value, Structure clustering analysis based on microsatellite data showed that ΔK reached its maximum at K=3; therefore, the optimal K value was 3. The studied populations were divided into three genetic clusters rather than being grouped according to sampling regions. This indicates the presence of gene flow among different regions, which is consistent with the results of the UPGMA clustering analysis. Figure 1 The deltaK (ΔK) values of structure output Figure 2 The structure output at K=3 Table 4 Distribution of P. orientalis germplasm subpopulations when K=3 Sub-population Shanting Yicheng Shizhong Tengzhou Total Q-Value Sub-population 1 27 3 2 7 39 0.619 Sub-population 2 18 5 0 5 28 0.476 Sub-population 3 23 1 2 7 33 0.461 Total 68 9 4 19 100 0.5187 Using PowerMarker software, UPGMA clustering based on Nei’s genetic distance was performed on 100 samples from four populations. The clustering results showed both similarities and differences compared with the three clusters identified by STRUCTURE. The main difference was that the proportions of samples from each provenance differed among the clusters. The similarity was that germplasm from the Shanting provenance was distributed across all three clusters. Based on the clustering outcomes from both methods, further analyses of kinship relationships among germplasm accessions can be conducted. To some extent, the clustering results indicate that genetic relatedness among populations is associated with geographic distribution; however, most samples did not cluster strictly according to their sampling regions, suggesting that there is a certain level of gene flow among different regions.

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