RGG_2024v15n6

Rice Genomics and Genetics 2024, Vol.15, No.5, 287-308 http://cropscipublisher.com/index.php/rgg 306 Alpuerto J., Hussain R., and Fukao T., 2016, The key regulator of submergence tolerance SUB1A promotes photosynthetic and metabolic recovery from submergence damage in rice leaves, Plant Cell and Environment, 393: 672-84. https://doi.org/10.1111/pce.12661 Barik J., Kumar V., Lenka S., and Panda D., 2020, Assessment of variation in morpho-physiological traits and genetic diversity in relation to submergence tolerance of five indigenous lowland rice landraces, Rice Science, 27 32-43. https://doi.org/10.1016/j.rsci.2019.12.004 Barrero L., Willmann M., Craft E., Akther K., Harrington S., Garzón-Martínez G., Glahn R., Piñeros M., and McCouch S., 2021, Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils, Plant Direct, 6(12): e469. https://doi.org/10.1002/pld3.469 Beena R., Kirubakaran S., Nithya N., Manickavelu A., Sah R., Abida P., Sreekumar J., Jaslam P., Rejeth R., Jayalekshmy V., Roy S., Manju R., Viji M., and Siddique K., 2021, Association mapping of drought tolerance and agronomic traits in rice (Oryza sativa L.) landraces, BMC Plant Biology, 21: 1-21. https://doi.org/10.1186/s12870-021-03272-3 De Oliveira-Busatto L., Da Silva Giordano C., Da Silva M., Uhry D., Guzman F., Wiebke-Strohm B., Li Z., Bredemeier C., and Bodanese-Zanettini M., 2022, Identification of functional genetic variations underlying flooding tolerance in brazilian soybean genotypes, International Journal of Molecular Sciences, 23(18): 10611. https://doi.org/10.3390/ijms231810611 Entila F., Pacleb M., Ella E., and Ismail A., 2021, Genome-wide association mapping and systems-level analysis reveal genetic architecture and physiological mechanisms linked with tolerance to flooding during germination in rice, bioRxiv, (2021): 21-25. https://doi.org/10.1101/2021.05.09.443312 Gonzaga Z., Carandang J., Sanchez D., Mackill D., and Septiningsih E., 2016, Mapping additional QTLs from FR13A to increase submergence tolerance in rice beyond SUB1, Euphytica, 209: 627-636. https://doi.org/10.1007/s10681-016-1636-z Kato Y., Collard B., Septiningsih E., and Ismail A., 2019, Increasing flooding tolerance in rice: combining tolerance of submergence and of stagnant flooding, Annals of Botany, 124(7): 1199-1209. https://doi.org/10.1093/aob/mcz118 Khahani B., Tavakol E., Shariati V., and Rossini L., 2021, Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield yield-related traits and root architecture under water deficit conditions, Scientific Reports, 11(1): 6942. https://doi.org/10.1038/s41598-021-86259-2 Kurokawa Y., Nagai K., Huan P., Shimazaki K., Qu H., Mori Y., Toda Y., Kuroha T., Hayashi N., Aiga S., Itoh J., Yoshimura A., Sasaki-Sekimoto Y., Ohta H., Shimojima M., Malik A., Pedersen O., Colmer T., and Ashikari M., 2018, Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.., The New Phytologist, 218(4): 1558-1569. https://doi.org/10.1111/nph.15070 Lin C., Ogorek L., Liu D., Pedersen O., and Sauter M., 2022, A QTL conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots, The New Phytologist, 238(4): 1403-1419. https://doi.org/10.1111/nph.18678 Lin Y., Li W., Zhang Y., Xia C., Liu Y., Wang C., Xu R., and Zhang L., 2019, Identification of genes/proteins related to submergence tolerance by transcriptome and proteome analyses in soybean, Scientific Reports, 9(1): 14688. https://doi.org/10.1038/s41598-019-50757-1 Locke A., Barding G., Sathnur S., Larive C., and Bailey-Serres J., 2018, Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery.., Plant cell and Environment, 4(14): 721-736. https://doi.org/10.1111/pce.13094 Naithani S., Mohanty B., Elser J., D’Eustachio P., and Jaiswal P., 2023, Biocuration of a transcription factors network involved in submergence tolerance during seed germination and coleoptile elongation in rice Oryza sativa, Plants, 12(11): 2146. https://doi.org/10.3390/plants12112146 Nascimento F., Rocha A., Soares J., Mascarenhas M., Ferreira M., Lino L., De Souza Ramos A., Diniz L., Mendes T., Ferreira C., Santos-Serejo J., and Amorim E., 2023, Gene editing for plant resistance to abiotic factors: a systematic review, Plants, 12(2): 305. https://doi.org/10.3390/plants12020305 Oe S., Sasayama D., Luo Q., Fukayama H., Hatanaka T., and Azuma T., 2021, Growth responses of seedlings under complete submergence in rice cultivars carrying both the submergence-tolerance gene SUB1A-1 and the floating genes SNORKELs, Plant Production Science, 25: 70-77. https://doi.org/10.1080/1343943X.2021.1943465 Oladosu Y., Rafii M., Arolu F., Chukwu S., Muhammad I., Kareem I., Salisu M., and Arolu I., 2020, Submergence tolerance in rice: review of mechanism breeding and future prospects, Sustainability, 12: 1632. https://doi.org/10.3390/su12041632 Panda D., Barik J., and Sarkar R., 2021, Recent advances of genetic resources genes and genetic approaches for flooding tolerance in rice, Current Genomics, 22: 41-58. https://doi.org/10.2174/1389202922666210114104140

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