Cotton Genomics and Genetics 2025, Vol.16, No.6, 300-309 http://cropscipublisher.com/index.php/cgg 308 Ge X., Xu J., Yang Z., Yang X., Wang Y., Chen Y., Wang P., and Li F., 2022, Efficient genotype-independent cotton genetic transformation and genome editing, Journal of Integrative Plant Biology, 65(4): 907-917. https://doi.org/10.1111/jipb.13427 He S., Sun G., Geng X., Gong W., Dai P., Jia Y., Shi W., Pan Z., Wang J., Wang L., Xiao S., Chen B., Cui S., You C., Xie Z., Wang F., Sun J., Fu G., Peng Z., Hu D., Wang L., Pang B., and Du X., 2021, The genomic basis of geographic differentiation and fiber improvement in cultivated cotton, Nature Genetics, 53(6): 916-924. https://doi.org/10.1038/s41588-021-00844-9 Hui F., Tang X., Li B., Alariqi M., Xu Z., Meng Q., Hu Y., Wang G., Zhang Y., Zhang X., and Jin S., 2024, Robust CRISPR/Mb2Cas12a genome editing tools in cotton plants, iMeta, 3(3): e209. https://doi.org/10.1002/imt2.209 Jin S., Han Z., Hu Y., Si Z., Dai F., He L., Cheng Y., Li Y., Zhao T., Fang L., and Zhang T., 2023, Structural variation-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons, Molecular Plant, 16(4): 678-693. https://doi.org/10.1016/j.molp.2023.02.004 Khalilisamani N., Li Z., Pettolino F., Moncuquet P., Reverter A., and MacMillan C., 2024, Leveraging transcriptomics-based approaches to enhance genomic prediction: integrating SNPs and gene networks for cotton fibre quality improvement, Frontiers in Plant Science, 15: 1420837. https://doi.org/10.3389/fpls.2024.1420837 Khan Z., Khan S., Ahmed A., Iqbal M., Mubarik M., Ghouri M., Ahmad F., Yaseen S., Ali Z., Khan A., and Azhar M., 2023, Genome editing in cotton: challenges and opportunities, Journal of Cotton Research, 6(1): 3. https://doi.org/10.1186/s42397-023-00140-3 Kumar R., Das J., Puttaswamy R., Kumar M., Balasubramani G., and Prasad Y., 2024, Targeted genome editing for cotton improvement: prospects and challenges, The Nucleus, 67(1): 181-203. https://doi.org/10.1007/s13237-024-00479-1 Lassoued R., Phillips P., Macall D., Hesseln H., and Smyth S., 2021, Expert opinions on the regulation of plant genome editing, Plant Biotechnology Journal, 19(6): 1104-1109. https://doi.org/10.1111/pbi.13597 Lei J., Li Y., Dai P., Liu C., Zhao Y., You Y., Qu Y., Chen Q., and Liu X., 2022, Efficient virus-mediated genome editing in cotton using the CRISPR/Cas9 system, Frontiers in Plant Science, 13: 1032799. https://doi.org/10.3389/fpls.2022.1032799 Li B., Fu C., Zhou J., Hui F., Wang Q., Wang F., Wang G., Xu Z., Che L., Yuan D., Wang Y., Zhang X., and Jin S., 2022, Highly efficient genome editing using Geminivirus-based CRISPR/Cas9 system in cotton plant, Cells, 11(18): 2902. https://doi.org/10.3390/cells11182902 Li J., Liu Z., You C., Qi Z., You J., Grover C., Long Y., Huang X., Lu S., Wang Y., Zhang S., Wang Y., Bai R., Zhang M., Jin S., Nie X., Wendel J., Zhang X., and Wang M., 2024, Convergence and divergence of diploid and tetraploid cotton genomes, Nature Genetics, 56(11): 2562-2573. https://doi.org/10.1038/s41588-024-01964-8 Li J., Yuan D., Wang P., Wang Q., Sun M., Liu Z., Si H., Xu Z., Zhang B., Pei L., Tu L., Zhu L., Chen L., Lindsey K., Zhang X., Jin S., and Wang M., 2021, Cotton pan-genome retrieves the lost sequences and genes during domestication and selection, Genome Biology, 22(1): 119. https://doi.org/10.1186/s13059-021-02351-w Liang S., Alariqi M., Wang F., Wang G., Wang Q., Xu Z., Yu L., Zafar M., Sun L., Si H., Yuan D., Guo W., Wang Y., Lindsey K., Zhang X., and Jin S., 2020, The application of temperature-sensitive CRISPR/LbCpf1 (LbCas12a)-mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol-free cotton, Plant Biotechnology Journal, 19(2): 221-223. https://doi.org/10.1111/pbi.13470 Lin Y., Mayer M., Torres D., Pook T., Hölker A., Presterl T., Ouzunova M., and Schön C., 2024, Genomic prediction within and across maize landrace-derived populations using haplotypes, Frontiers in Plant Science, 15: 1351466. https://doi.org/10.3389/fpls.2024.1351466 Lyzenga W., Pozniak C., and Kagale S., 2021, Advanced domestication: harnessing the precision of gene editing in crop breeding, Plant Biotechnology Journal, 19(4): 660-670. https://doi.org/10.1111/pbi.13576 Molla K., Sretenovic S., Bansal K., and Qi Y., 2021, Precise plant genome editing using base editors and prime editors, Nature Plants, 7(9): 1166-1187. https://doi.org/10.1038/s41477-021-00991-1 Peng R., Jones D., Liu F., and Zhang B., 2020, From sequencing to genome editing for cotton improvement, Trends in Biotechnology, 39(3): 221-224. https://doi.org/10.1016/j.tibtech.2020.09.001 Saleem M., Khan S., Ahmad A., Rana I., Naveed Z., and Khan A., 2024, The 4Fs of cotton: genome editing of cotton for fiber, food, feed, and fuel to achieve zero hunger, Frontiers in Genome Editing, 6: 1401088. https://doi.org/10.3389/fgeed.2024.1401088 Sivabharathi R., Rajagopalan V., Suresh R., Sudha M., Karthikeyan G., Jayakanthan M., and Raveendran M., 2024, Haplotype-based breeding: a new insight in crop improvement, Plant Science, 346: 112129. https://doi.org/10.1016/j.plantsci.2024.112129
RkJQdWJsaXNoZXIy MjQ4ODYzNA==