CGG_2025v16n6

Cotton Genomics and Genetics 2025, Vol.16, No.6, 290-299 http://cropscipublisher.com/index.php/cgg 298 Hou L., Zhu L., Xue H., Liu Z., and Xiao G., 2022, Three root hair defective genes, GhRHD3-1, GhRHD4-1, and GhRSL4-1, regulate fiber cell elongation in cotton, Industrial Crops and Products, 180: 114751. https://doi.org/10.1016/j.indcrop.2022.114751 Jan M., Liu Z., Guo C., and Sun X., 2022, Molecular regulation of cotton fiber development: a review, International Journal of Molecular Sciences, 23(9): 5004. https://doi.org/10.3390/ijms23095004 Khalilisamani N., Li Z., Pettolino F., Moncuquet P., Reverter A., and MacMillan C., 2024, Leveraging transcriptomics-based approaches to enhance genomic prediction: integrating SNPs and gene networks for cotton fibre quality improvement, Frontiers in Plant Science, 15: 1420837. https://doi.org/10.3389/fpls.2024.1420837 Khan M., Wahid A., Ahmad M., Tahir M., Ahmed M., Ahmad S., and Hasanuzzaman M., 2020, World cotton production and consumption: an overview, In: Cotton production and uses: agronomy, crop protection, and postharvest technologies, pp.1-7. https://doi.org/10.1007/978-981-15-1472-2_1 Li P., Wang M., Lu Q., Ge Q., Rashid M., Liu A., Gōng J., Shang H., Gǒng W., Li J., Song W., Guo L., Su W., Li S., Guo X., Shi Y., and Yuan Y., 2017, Comparative transcriptome analysis of cotton fiber development of upland cotton (Gossypium hirsutum) and chromosome segment substitution lines from G. hirsutum×G. barbadense, BMC Genomics, 18(1): 705. https://doi.org/10.1186/s12864-017-4077-8 Liu L., Chen G., Li S., Gu Y., Lu L., Qanmber G., Mendu V., Liu Z., Li F., and Yang Z., 2022, A brassinosteroid transcriptional regulatory network participates in regulating fiber elongation in cotton, Plant Physiology, 191(3): 1985-2000. https://doi.org/10.1093/plphys/kiac590 Lu R., Li Y., Zhang J., Wang Y., Zhang J., Li Y., Zheng Y., and Li X., 2022, The bHLH/HLH transcription factors GhFP2 and GhACE1 antagonistically regulate fiber elongation in cotton, Plant Physiology, 189(2): 628-643. https://doi.org/10.1093/plphys/kiac088 Ma J., Yang L., Dang Y., Shahzad K., Song J., Jia B., Wang L., Feng J., Wang N., Pei W., Wu M., Zhang X., Zhang J., Wu J., and Yu J., 2024, Deciphering the dynamic expression network of fiber elongation and the functional role of the GhTUB5 gene for fiber length in cotton based on an introgression population of upland cotton, Journal of Advanced Research, 73: 1-14. https://doi.org/10.1016/j.jare.2024.08.004 Mathangadeera R., Hequet E., Kelly B., Dever J., and Kelly C., 2020, Importance of cotton fiber elongation in fiber processing, Industrial Crops and Products, 147: 112217. https://doi.org/10.1016/j.indcrop.2020.112217 Qanmber G., You Q., Yang Z., Fang L., Zhang Z., Chai M., Gao B., Li F., and Yang Z., 2023, Transcriptional and translational landscape fine-tune genome annotation and explores translation control in cotton, Journal of Advanced Research, 58: 13-30. https://doi.org/10.1016/j.jare.2023.05.004 Qi G., Si Z., Xuan L., Han Z., Hu Y., Fang L., Dai F., and Zhang T., 2024, Unravelling the genetic basis and regulation networks related to fibre quality improvement using chromosome segment substitution lines in cotton, Plant Biotechnology Journal, 22(11): 3135-3150. https://doi.org/10.1111/pbi.14436 Qin Y., Sun M., Li W., Xu M., Shao L., Liu Y., Zhao G., Liu Z., Xu Z., You J., Ye Z., Xu J., Yang X., Wang M., Lindsey K., Zhang X., and Tu L., 2022, Single-cell RNA-seq reveals fate determination control of an individual fibre cell initiation in cotton (Gossypium hirsutum), Plant Biotechnology Journal, 20(12): 2372-2388. https://doi.org/10.1111/pbi.13918 Rao A., Barkley D., França G., and Yanai I., 2021, Exploring tissue architecture using spatial transcriptomics, Nature, 596(7871): 211-220. https://doi.org/10.1038/s41586-021-03634-9 Robles-Remacho A., Sanchez-Martin R., and Díaz-Mochón J., 2023, Spatial transcriptomics: emerging technologies in tissue gene expression profiling, Analytical Chemistry, 95(42): 15450-15460. https://doi.org/10.1021/acs.analchem.3c02029 Suo Q., Fang N., Zeng J., Yan F., Zhu X., Wang Y., Yu W., Chen J., Liang A., Li Y., Kong J., and Xiao Y., 2024, R2R3 MYB transcription factor GhMYB201 promotes cotton fiber elongation via cell wall loosening and very-long-chain fatty acid synthesis, International Journal of Molecular Sciences, 25(17): 9559. https://doi.org/10.3390/ijms25179559 Swaminathan S., Grover C., Mugisha A., Sichterman L., Lee Y., Yang P., Mallery E., Jareczek J., Leach A., Xie J., Wendel J., Szymanski D., and Zabotina O., 2024, Daily glycome and transcriptome profiling reveals polysaccharide structures and correlated glycosyltransferases critical for cotton fiber growth, The Plant Journal, 120(5): 1857-1879. https://doi.org/10.1111/tpj.17084 Tian X., Ji M., You J., Zhang Y., Lindsey K., Zhang X., Tu L., and Wang M., 2024, Synergistic interplay of redox homeostasis and polysaccharide synthesis promotes cotton fiber elongation, The Plant Journal, 118(2): 405-422. https://doi.org/10.1111/tpj.16615 Wan X., Xiao J., Tam S., Cai M., Sugimura R., Wang Y., Wan X., Lin Z., Wu A., and Yang C., 2023, Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope, Nature Communications, 14(1): 7848. https://doi.org/10.1038/s41467-023-43629-w

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