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Basic HTML Version

分子植物育种
(
网络版
), 2012
,
10
,
1138
-
1144
Fenzi Zhiwu Yuzhong (Online), 2012, Vol.10, 1138
-
1144
http://mpb.5th.sophiapublisher.com
1142
序列作查询序列搜索
BLAST
数据库发现基因片
段,同时截取基因及上游
2kbp
调控序列片段,序
列比对用
Clustal W
软件进行,比对结果文件保存
.phy
文件。
3.4 SNP/InDel
位点提取和数目统计
SNP/InDel
位点的提取,位点和数目统计用
TASSEL
(http://sourceforge.net/projects/tassel)
完成。
作者贡献
高东是本研究的实验设计和实验研究的执行人;高东、
毛如志及杨香婷完成数据分析;毛如志,魏富刚论文初稿的
写作;高东是论文的构思者及负责人,指导实验设计,数据
分析,论文写作与修改。全体作者都阅读并同意最终的文本。
致谢
本研究国家重点基础研究发展计划
(973
项目
)
课题
(2011CB100406)
资助。
参考文献
Akahashi Y., Shomura A., Sasaki T., and Yano M., 2001,
Hd6
, a
rice quantitative trait locus involved in photoperiod
sensitivity, encodes the α subunit of protein kinase CK2,
Proc. Natl. Acad. Sci. USA, 98(14): 7922-7927
Boss P.K., Bastow R.M., Mylne J.S., and Dean C., 2004,
Multiple pathways in the decision to flower: enabling,
promoting, and resetting, Plant Cell., 16: 18-31 http://
dx.doi.org/10.1105/tpc.015958 PMid:15037730 PMCid:
2643402
Doi K., Izawa T., Fuse T., Yamanouchi U., Kubo T., Shimatani
Z., Yano M., and Yoshimura1 A., 2004,
Ehd1
, a B-type
response regulator in rice, confers short-day promotion
of flowering and controls
FT
-like gene expression
independently of
Hd1
, Genes Dev., 18(8): 926-936 http://
dx.doi.org/10.1101/gad.1189604
Goff S.A., Ricke D., Lan T.H., Presting G., Wang R., Dunn M.,
Glazebrook J., Sessions A., Oeller P., Varma H., Hadley D.,
Hutchison D., Martin C., Katagifi F., Lange B.M.,
Moughamer T., Xia Y., Budworth P., Zhong J., Miguel T.,
Paszkowski U., Zhang S., Colbert M., Sun W.L., Chen L.,
Cooper B., Park S., Wood T.C., Mao L., Quail P., Wing R.,
Dean R., Yu Y., Zharkikh A., Shen R., Sahasrabudhe S.,
Thomas A., Cannings R., Gutin A., Pruss D., Reid J.,
Tavtigian S., Mitchell J., Eldredge G., Scholl T., Miller
R.M., Bhatnagar S., Adey N., Rubano T., Tusneem N.,
Robinson R., Feldhaus J., Macalma T., Oliphant A., and
Briggs S., 2002, A draft sequence of the rice genome
(
Oryza sativa
L. ssp.
japonica
), Science, 296(5565): 92-100
http://dx.doi.org/10.1126/science.1068275 PMid:11935018
Griffiths S., Dunford R.P., Coupland G., and Laurie D.A., 2003,
The evolution of CONSTANS-like gene families in barley,
rice, and
Arabidopsis
, Plant Physiol., 131(4):1855-1867
http://dx.doi.org/10.1104/pp.102.016188 PMid:12692345
PMCid:166942
Hayama R., Yokoi S., Tamaki S., Yano M., and Shimamoto K.,
2003, Adaptation of photoperiodic control pathways
produces short-day flowering in rice, Nature, 422(6933):
719-722 http://dx.doi.org/10.1038/nature01549 PMid:
12700762
Izawa T., Oikawa T., Sugiyama N., Tanisaka T., Yano M., and
Shimamoto K., 2002, Phytochrome mediates the external
light signal to repress
FT
orthologs in photoperiodic
flowering of rice, Genes Dev., 16(15): 2006-2020 http://
dx.doi.org/10.1101/gad.999202
Izawa T., Oikawa T., Tokutomi S., Okuno K., and Shimamoto
K., 2000, Phytochromes confer the photoperiodic control
of flowering in rice (a short-day plant), The Plant Journal,
22(5): 391-399 http://dx.doi.org/10.1046/j.1365-313X.2000.
00753.x PMid:10849355
Izawa T., Takahashi Y.J., and Yano M., 2003, Comparative
biology comes into bloom: genomic and genetic
comparison of flowering pathways in rice and
Arabidopsis
,
Curr. Opin. Plant Biol., 6(2): 113-120 http://dx.doi.org/10.
1016/S1369-5266(03)00014-1
Kojima S., Takahashi Y., Kobayashi Y., Monna L., Sasaki T.,
Araki T., and Yano M., 2002,
Hd3a
, a rice ortholog of the
Arabidopsis FT
gene, promotes transition to flowering
downstream of
Hd1
under short-day conditions, Plant and
Cell Physiol., 43(10): 1096-1105 http://dx.doi.org/10.1093/
pcp/pcf156 PMid:12407188
Kostka M., Uzlikova M., Cepicka I., and Flegr J., 2008,
SlowFaster, a user-friendly program for slow-fast analysis
and its application on phylogeny of Blastocystis, BMC
bioinformatics, 9: 341-347 http://dx.doi.org/10.1186/1471-
2105-9-341 PMid:18702831 PMCid:2529323
Lee J.H., Cho Y.S., Yoon H.S., Suh M.C., Moon J., Lee I.,
Weigel D., Yun C.H., Kim J.M., 2005, Conservation and
divergence of
FCA
function between
Arabidopsis
and rice,
Plant Molecular Biology, 58(6): 823-838 http://dx.doi.
org/10.1007/s11103-005-8105-8 PMid:16240176
Lee S., Kim J., Son J.S., Nam J., Jeong D.H., Lee K., Jang S.,
Yoo J., Lee J., Lee D.Y., Kang H.G., and An G., 2003,
Sysmmatic reverse genetic screening of T-DNA tagged
genes in rice for functional genomic analyses: MADS-box
genes as a test case, Plant and Cell Physiol., 44(12):
1403-1411 http://dx.doi.org/10.1093/pcp/pcg156 PMid:
14701936